Molecular Interaction Analysis of Homodihydrocapsaicin as COX-2 Inhibitor

Maria Nona Elci Lele, Nurul Imaniyah Ahmad, Yohanes Bare

Abstract


Pemanfaatan Capsicum frutescens L sebagai terapi berbagai penyakit  salah satunya inflamasi di dalam tubuh, menjadi fokus saat ini dikarenakan mengandung senyawa bersifat farmakologis seperti homodihydrocapsaicin. Senyawa yang diperoleh homodihydrocapsaicin didownload SMILES dari aplikasi PubChem dengan (CID: 3084336) diunduh dari database PubChem, Protein COX-2 (ID 6cox) diunduh dari Protein Data Bank. Proses preparasi protein dan ligan,  docking, visualisasi maupun analisis mengadopsi penelitian sebelumnya. Tujuan penelitian menganalisis interaksi molekuler senyawa homodihydrocapsaicin sebagai Inhibitor COX-2. Interaksi senyawa homodihydrocapsaicin dan COX-2 membentuk beberapa ikatan residu asam amino yang membentuk ikatan hidrofobik, ikatan hydrogen, dan gaya van der Waals. Energi ikatan yang terbentuk adalah -284.86 cal/mol, sehingga senyawa   homodihydrocapsaicin sebagai terapi inflamasi dengan menghambat mediator inflamasi (COX-2). Capsicum frutescens L. dapat dimanfaatkan sebagai terapi inflamasi didalam tubuh.


Keywords


Capsicum frutescens L, cox-2, homodihydrocapsaicin

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References


K. Singletary, “Red Pepper: Overview of Potential Health Benefits,” Nutrition Today, vol. 46, no. 1, 2011, [Online]. Available: https://journals.lww.com/nutritiontodayonline/Fulltext/2011/01000/Red_Pepper__Overview_of_Potential_Health_Benefits.9.aspx

N. I. Ahmad, Y. N. Bunga, and Y. Bare, “Etnobotani Tanaman Cabai Merah Keriting (Capsicum Annum L.) Di Desa Waiwuring, Kecamatan Witihama Kabupaten Flores Timur,” Spizaetus: Jurnal Biologi dan Pendidikan Biologi, vol. 2, no. 2, p. 10, 2019.

Y. Bare, “ANALISIS SENYAWA FITOSTEROL Cymbopogon citratus dan Curcuma longa SEBAGAI ANTIALZHEIMER,” Biopendix: Jurnal Biologi, Pendidikan dan terapan, vol. 7, no. 2, pp. 53–159, 2021, doi: https://doi.org/10.30598/biopendixvol7issue2page153-159.

M. A. Tatengkeng, “Kadar Vitamin C Cabai Rawit (Capsicum frutescens L) Hasil Ozonasi Selama Penyimpanan Suhu Ruang,” PFTJ, vol. 6, no. 2, p. 102, Jul. 2019, doi: 10.23969/pftj.v6i2.1296.

M. Reyes-Escogido, E. G. Gonzalez-Mondragon, and E. Vazquez-Tzompantzi, “Chemical and Pharmacological Aspects of Capsaicin,” Molecules, vol. 16, no. 2, pp. 1253–1270, Jan. 2011, doi: 10.3390/molecules16021253.

S. Sanati, B. M. Razavi, and hossein hosseinzadeh, “A review of the effects of Capsicum annuum L. and its constituent, capsaicin, in metabolic syndrome,” Iranian Journal of Basic Medical Sciences, vol. 21, no. 5, May 2018, doi: 10.22038/ijbms.2018.25200.6238.

Y. Bare, N. I. Ahmad, and Y. N. Bunga, “Molecular Interaction of Chili Compounds (Capsicum annum L) as a COX-2 Inhibitor,” Jurnal Mangifera Edu, vol. 6, no. 2, pp. 115–128, 2022, doi: https://doi.org/10.31943/mangiferaedu.v6i2.124.

T. N. Elfi, Y. N. Bunga, and Y. Bare, “Studi Aktivitas Biologi Secara In Silico Senyawa Nonivamide Dan Nordihydrocapsaicin Sebagai Anti Inflamasi,” florea, vol. 8, no. 2, p. 82, Nov. 2021, doi: 10.25273/florea.v8i2.9983.

Y. Bare and D. R. T. Sari, “Pengembangan Lembar Kerja Mahasiswa (LKM) Berbasis Inkuiri Pada Materi Interaksi Molekuler,” BioEdUIN, vol. 11, no. 1, p. 8, 2021, doi: https://doi.org/10.15575/bioeduin.v11i1.12077.

D. Sari, J. Cairns, A. Safitri, and F. Fatchiyah, “Virtual Prediction of the Delphinidin-3-O-glucoside and Peonidin-3-O-glucoside as Anti-inflammatory of TNF- and #945; Signaling,” Acta Inform Med, vol. 27, no. 3, p. 152, 2019, doi: 10.5455/aim.2019.27.152-157.

Y. Bare, D. R. T. Sari, Y. T. Rachmad, G. C. Krisnamurti, and A. Elizabeth, “In Silico Insight the Prediction of Chlorogenic Acid in Coffee through Cyclooxygenase-2 (COX2) Interaction,” bio, vol. 7, no. 2, pp. 100–105, Dec. 2019, doi: 10.24252/bio.v7i2.9847.

B. Santoso and T. E. Atmajaya, “KAJIAN DOCKING SENYAWA 4-[(Z)-N-(4-hidroksifenil)carboksimidoil]-2- metoksifenol SEBAGAI INHIBITOR COX-2 MENGGUNAKAN PLANTS,” Conference: Prosiding Seminar Nasional Kimia UNJANI-HKI 2016, p. 9, 2016.

Y. Bare, D. R. T. Sari, M. C. Mogi, and M. M. D. Nurak, “Senyawa Fucodiphlorethol Dan Phloroglucinol Alga Coklat Sebagai Inhibitor Lipase Secara In Silico,” Florea : Jurnal Biologi dan Pembelajarannya, vol. 9, no. 1, p. 7, 2022, doi: http://doi.org/10.25273/florea.v9i1.11743.

Y. Bare, M. Helvina, G. C. Krisnamurti, and M. S, “The Potential Role of 6-gingerol and 6-shogaol as ACE Inhibitors in Silico Study,” bio, vol. 8, no. 2, p. 210, Dec. 2020, doi: 10.24252/bio.v8i2.15704.

G. C. Krisnamurti, D. R. T. Sari, and Y. Bare, “Capsaicinoids from Capsicum annuum as an Alternative FabH Inhibitor of Mycobacterium Tuberculosis: In Silico Study,” Makara Journal Of Science, vol. 25, no. 4, p. 9, 2021, doi: 10.7454/mss.v25i4.1248.

G. C. Krisnamurti, Y. Bare, M. Amin, and C. N. Primiani, “Combination of Curcumin from Curcuma longa and Procyanidin from Tamarindus indica in Inhibiting Cyclooxygenases for Primary Dysmenorrhea Therapy: In silico study,” Biointerface Res Appl Chem, vol. 11, no. 1, pp. 7460–7467, Jun. 2020, doi: 10.33263/BRIAC111.74607467.

R. P. Robertson and J. S. Harmon, “Diabetes, glucose toxicity, and oxidative stress: A case of double jeopardy for the pancreatic islet ?? cell,” Free Radical Biology and Medicine, vol. 41, no. 2, pp. 177–184, 2006, doi: 10.1016/j.freeradbiomed.2005.04.030.

Y. Xie et al., “Differentiation-dependent regulation of the cyclooxygenase cascade during adipogenesis suggests a complex role for prostaglandins,” Diabetes, Obesity and Metabolism, vol. 8, no. 1, pp. 83–93, Jan. 2006, doi: 10.1111/j.1463-1326.2005.00472.x.

N. Shanmugam, I. T. G. Gonzalo, and R. Natarajan, “Molecular Mechanisms of High Glucose-Induced Cyclooxygenase-2 Expression in Monocytes,” Diabetes, vol. 53, no. 3, pp. 795–802, 2004, doi: 10.2337/diabetes.53.3.795.

D. Chen, N. Oezguen, P. Urvil, C. Ferguson, S. M. Dann, and T. C. Savidge, “Regulation of protein-ligand binding affinity by hydrogen bond pairing,” Science Advances, vol. 2, no. 3, 2016, doi: 10.1126/sciadv.1501240.

Y. Bare, “Interaction Phloroglucinol as inflammation therapy through Cyclooxygenase-2 (COX-2) gene inhibition,” JINTO, vol. 8, no. 1, pp. 14–21, Mar. 2022, doi: 10.36733/medicamento.v8i1.3162.

Y. Bare, D. R. T. Sari, W. O. Ujiana, P. Y. S. Ra’o, and K. Pada, “REPURPOSING OF 6-PARADOL AS AN ALTERNATIVE HERBAL MEDICINE FOR ALZHEIMER DISEASE,” MS, vol. 7, no. 2, pp. 1–8, Apr. 2022, doi: 10.37874/ms.v7i2.289.

D. R. T. Sari, A. Safitri, J. R. K. Cairns, and F. Fatchiyah, “Virtual screening of black rice anthocyanins as antiobesity through inhibiting TLR4 and JNK pathway,” Journal of Physics: Conference Series, vol. 1665, no. 1, 2020, doi: 10.1088/1742-6596/1665/1/012024.

D. R. T. Sari, A. Safitri, J. R. K. Cairns, and F. Fatchiyah, “Anti-Apoptotic Activity of Anthocyanins has Potential to inhibit Caspase-3 Signaling,” Journal of Tropical life sciences, vol. 10, no. 1, pp. 15–25, 2020, doi: 10.11594/jtls.10.01.03.

Y. Bare, M. Helvina, A. Elizabeth, and D. R. T. Sari, “Potensi Asam Kafeat Pada Kopi Sebagai Simultan Gen Peroxixme Proliferator-Activated Receptor Gamma (Ppar-Î3): Studi in Silico,” Saintek Lahan Kering, vol. 2, no. Vol 2 No 2 (2019): JSLK Desember 2019, pp. 52–53, 2019.

A. Vincentius and Y. Bare, “Pemetaan Bioaktivitas Senyawa pada Kantung Tinta Cumi-cumi (Loligo vulgaris) Secara In Silico,” Jurnal Ilmiah Wahana Pendidikan, vol. 8, no. 2, pp. 09–16, Feb. 2022, doi: 10.5281/ZENODO.5971402.

D. R. T. Sari, G. C. Krisnamurti, and Y. Bare, “Pemetaan Bioaktivitas Senyawa Metabolit Sekunder Pada Kayu Secang (Caesalpinia sappan) Secara In Silico,” Journal Pharmasci (Journal of Pharmacy and Science), vol. 7, no. 1, p. 8, 2022.

Endah Wulandari and L. A. Hendarmin, “biokimia dan biomolekuler,” universitas negeri malang, 2005.




DOI: http://dx.doi.org/10.55241/spibio.v3i2.63

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